Advanced Training - Loading data to TranSMART

A session at tranSMART Foundation 2015 Annual Meeting

Monday 19th October, 2015

12:00pm to 1:30pm

Please register here: https://www.eventbrite.com/e/ann...

Loading data to TranSMART with transmart-data (and transmart-batch) using the TraIT Cell Line Use Case.

ETL is experienced as a fairly challenging step by many in the tranSMART community. Using the publicly available TraIT Cell Line Use Case (CLUC) dataset, data on the same set of cell lines on almost all data types supported by tranSMART, we will demonstrate how to prepare your data to the necessary formats, how to set up the ETL tooling and how to load the actual data.

We will try to give a short overview of the available ETL tooling (including tmDataLoader, ICE, transmart-batch), but will mainly focus on using transmart-data since this is the ETL of choice for eTRIKS and CTMM TraIT.

Wibo Pipping and Janneke Schoots are both Data Scientists at The Hyve with a longstanding experience on ETL for tranSMART.

Training provided by The Hyve.

About the speakers

This person is speaking at this event.
Wibo Pipping

Data Scientist bij The Hyve bio from LinkedIn

This person is speaking at this event.
Janneke van der Ploeg

Bioinformatics data analyst at The Hyve bio from LinkedIn

Next session in Zaal 4

2pm i2b2 back in tranSMART 1.3 by Paul Avillach

5 attendees

  • Jan Christoph
  • Janneke van der Ploeg
  • Samantha
  • Ward Weistra
  • Wibo Pipping

1 tracker

  • Peter Dresslar

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Time 12:00pm1:30pm AMT

Date Mon 19th October 2015

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